species:   Fugra
pid:       PID0918
parent:    FgmilR-7dps-10
paralog:   
locus:     NC_026474.1:6161254-6161466
matures:   ['UAGUAGAAUUCCGGCUUGGCCCU', 'GAGCCAACUGCAAUCUGUAAA']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026474.1:6161254-6161466

0 out of bounds
7 alignments
7 proper strand
6 stranded perfect matches

            *******************                                                                                                                                                     **********************           
UGUUGAGGGAGCCAACUGCAAUCUGUAAAAAUUUUCACAUCCUACAAGGCGGAGCAGUGAGAGGUCUGGUAGGAGUUGUUUGCACAUUCCAAGUGUUGUUGGUUAUAUAUCCAUCAUGCUGUCUGUUUCUUGAUCUGUGAACUCGUAGUUCAUCACUUUUGUUAUUACCCUCAAAUCGUGGUUUUAGUAGAAUUCCGGCUUGGCCCUUCAACA
(((((((((.((((((((.(((((((((((.....((..((((((.((((.............)))).))))))..))...((((.......))))((.(((........))).))....(((........)))..(((((((...)))))))(((.((((..........))))..))).))))).))).))).))).))))))))))))))
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAGUAGAAUUCCGGCUUGGCCCU------ l=23 a=0 c
--------GAGCCAACUGCAAUCUGUAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=0 c*
-----------------------------------------------------------------------------------------------------------------------UGUCUGUUUCUUGAUCUGUGAA------------------------------------------------------------------------ l=22 a=3 ma
--------GAGCCAACUGCAAUCUGUAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=0 ma*

-----------------------------------------------------------------------------------------------------------------------UGUCUGUUUCUUGAUCUGUaA------------------------------------------------------------------------- l=21 a=1 
-----------------------------------------------------------------------------------------------------------------------UGUCUGUUUCUUGAUCUGUGAA------------------------------------------------------------------------ l=22 a=3 (ma)
----------------------------------------------------------------------------------------------------------------------------------UGAUCUGUGAACUCGUAGUUCA------------------------------------------------------------- l=22 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUAGUAGAAUUCCGGCUUGGCCCUU----- l=25 a=2 

mb-00010
ax-1011011
ku-01
ss-101111111100
fn-011
